STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR60824.1Hypothetical protein; COG0590 Cytosine/adenosine deaminases. (168 aa)    
Predicted Functional Partners:
EAR61099.1
COG1654 Biotin operon repressor.
  
    0.878
EAR61397.1
GTP cyclohydrolase II / 3,4-dihydroxy-2-butanone 4-phosphate synthase; COG0108 3,4-dihydroxy-2-butanone 4-phosphate synthase.
    
 0.876
EAR60341.1
COG0692 Uracil DNA glycosylase.
 
 
 0.839
EAR61281.1
COG1062 Zn-dependent alcohol dehydrogenases, class III.
  
 
  0.784
hisE
COG0140 Phosphoribosyl-ATP pyrophosphohydrolase.
   
    0.783
EAR61101.1
COG0207 Thymidylate synthase.
  
 
 0.685
EAR62883.1
COG2065 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase.
 
  
  0.667
upp
Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate.
   
 0.662
EAR63057.1
mesJ protein; COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control.
 
 0.660
tmk
Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
 
  
 0.619
Your Current Organism:
Neptuniibacter caesariensis
NCBI taxonomy Id: 207954
Other names: CCUG 52065, CECT 7075, N. caesariensis, Neptuniibacter caesariensis Arahal et al. 2007, Oceanospirillum sp. MED92, strain MED92
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.