STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR60236.1Putative S-adenosylmethionine:tRNAribosyltransferase-isomerase; COG0809 S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase). (350 aa)    
Predicted Functional Partners:
EAR60235.1
COG0343 Queuine/archaeosine tRNA-ribosyltransferase.
 
 0.998
EAR60132.1
COG2255 Holliday junction resolvasome, helicase subunit.
 
  
 0.874
EAR60355.1
COG1600 Uncharacterized Fe-S protein.
 
  
 0.808
EAR60131.1
COG0632 Holliday junction resolvasome, DNA-binding subunit.
 
  
 0.785
EAR61834.1
GTP cyclohydrolase I, putative; COG2904 Uncharacterized protein conserved in bacteria.
 
  
 0.708
EAR60234.1
COG1862 Preprotein translocase subunit YajC.
     
 0.699
thiI
Thiamin biosynthesis protein ThiI; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS.
  
  
 0.634
EAR60233.1
COG0342 Preprotein translocase subunit SecD.
  
  
 0.631
EAR60232.1
COG0341 Preprotein translocase subunit SecF.
     
 0.628
EAR59922.1
Tetratricopeptide; COG0457 FOG: TPR repeat.
  
    0.606
Your Current Organism:
Neptuniibacter caesariensis
NCBI taxonomy Id: 207954
Other names: CCUG 52065, CECT 7075, N. caesariensis, Neptuniibacter caesariensis Arahal et al. 2007, Oceanospirillum sp. MED92, strain MED92
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.