STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR59863.1COG1734 DnaK suppressor protein. (142 aa)    
Predicted Functional Partners:
rpoZ
COG1758 DNA-directed RNA polymerase, subunit K/omega.
 
 
 
 0.934
EAR59641.1
COG0086 DNA-directed RNA polymerase, beta' subunit/160 kD subunit.
    
 
 0.898
rpoB
COG0085 DNA-directed RNA polymerase, beta subunit/140 kD subunit.
   
 
 0.888
EAR61504.1
COG0202 DNA-directed RNA polymerase, alpha subunit/40 kD subunit.
  
 
 0.793
hfq
RNA-binding protein Hfq; COG1923 Uncharacterized host factor I protein.
   
  
 0.706
EAR59864.1
COG0008 Glutamyl- and glutaminyl-tRNA synthetases.
     
 0.694
EAR62762.1
COG0568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32).
  
 
 0.666
EAR60734.1
COG0568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32).
    
 
 0.659
rpoD
RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
    
 
 0.659
EAR59861.1
COG1489 DNA-binding protein, stimulates sugar fermentation.
 
  
 0.651
Your Current Organism:
Neptuniibacter caesariensis
NCBI taxonomy Id: 207954
Other names: CCUG 52065, CECT 7075, N. caesariensis, Neptuniibacter caesariensis Arahal et al. 2007, Oceanospirillum sp. MED92, strain MED92
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.