STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR59874.1Probable ribosomal RNA small subunit methyltransferase; COG2813 16S RNA G1207 methylase RsmC. (346 aa)    
Predicted Functional Partners:
EAR59873.1
COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases.
 
     0.857
EAR61483.1
GTP-binding protein; COG0536 Predicted GTPase.
   
    0.601
EAR59872.1
Hypothetical protein; COG0720 6-pyruvoyl-tetrahydropterin synthase.
       0.535
rlmL
Hypothetical protein; Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA. Belongs to the methyltransferase superfamily. RlmKL family.
   
  
 0.533
EAR59645.1
COG0081 Ribosomal protein L1.
  
    0.472
EAR59643.1
COG0222 Ribosomal protein L7/L12.
  
  
 0.471
rpoB
COG0085 DNA-directed RNA polymerase, beta subunit/140 kD subunit.
  
    0.468
EAR59647.1
Transcription antitermination protein NusG; COG0250 Transcription antiterminator.
  
  
 0.456
tsf
Elongation factor Ts; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.
  
    0.454
EAR62266.1
Hypothetical protein.
  
     0.449
Your Current Organism:
Neptuniibacter caesariensis
NCBI taxonomy Id: 207954
Other names: CCUG 52065, CECT 7075, N. caesariensis, Neptuniibacter caesariensis Arahal et al. 2007, Oceanospirillum sp. MED92, strain MED92
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.