STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
truBCOG0130 Pseudouridine synthase. (307 aa)    
Predicted Functional Partners:
infB
COG0532 Translation initiation factor 2 (IF-2; GTPase).
 
 0.997
EAR59759.1
COG0858 Ribosome-binding factor A.
 
  
 0.992
EAR61479.1
Hypothetical protein; COG0196 FAD synthase.
  
 0.965
EAR59761.1
COG0195 Transcription elongation factor.
  
    0.940
EAR59757.1
COG0184 Ribosomal protein S15P/S13E.
  
 
 0.934
guaA
Bifunctional GMP synthase/glutamine amidotransferase protein; Catalyzes the synthesis of GMP from XMP.
  
  
 0.921
rapA
Probable ATP-dependent helicase HepA; Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair; Belongs to the SNF2/RAD54 helicase family. RapA subfamily.
  
 
 0.913
EAR59756.1
COG1185 Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase).
 
  
 0.912
EAR62409.1
Hypothetical protein; COG1444 Predicted P-loop ATPase fused to an acetyltransferase.
   
 
 0.905
EAR59589.1
GTP-binding protein; COG1161 Predicted GTPases.
   
 
 0.885
Your Current Organism:
Neptuniibacter caesariensis
NCBI taxonomy Id: 207954
Other names: CCUG 52065, CECT 7075, N. caesariensis, Neptuniibacter caesariensis Arahal et al. 2007, Oceanospirillum sp. MED92, strain MED92
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.