STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APZ04017.1AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (254 aa)    
Predicted Functional Partners:
APZ04018.1
Threonine transporter RhtB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.799
ramA
DNA-binding transcriptional regulator RamA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.671
APZ06567.1
AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.649
marA
MDR efflux pump AcrAB transcriptional activator MarA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.637
APZ06181.1
DNA-binding transcriptional regulator RamA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.606
soxS
AraC family transcriptional regulator; Regulates genes involved in response to oxidative stress; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.594
rhaR
AraC family transcriptional regulator; Activates expression of the rhaSR operon in response to L- rhamnose.
  
   
 0.575
APZ07129.1
AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.548
robA
MDR efflux pump AcrAB transcriptional activator RobA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.530
APZ06824.1
AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.524
Your Current Organism:
Kosakonia cowanii
NCBI taxonomy Id: 208223
Other names: CCUG 45998 A, CCUG 45998 B, CIP 107300, DSM 18146, Enterobacter cowanii, Enterobacter cowanii Inoue et al. 2001, JCM 10956, K. cowanii, Kosakonia cowanii (Inoue et al. 2001) Brady et al. 2013, LMG 23569, LMG:23569, NIH group 42, strain 888-76, strain KSK 246, strain UM-79
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