Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
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Databases
Textmining
[Homology]
Score
APZ04365.1Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (39 aa)    
Predicted Functional Partners:
APZ04364.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.651
APZ04367.1
Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.614
APZ04368.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.606
APZ04355.1
Baseplate assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.604
APZ04356.1
Baseplate assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.566
APZ04353.1
Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.512
APZ04348.1
Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.504
APZ04341.1
Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.493
APZ04362.1
Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.417
APZ04354.1
Baseplate assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.413
Your Current Organism:
Kosakonia cowanii
NCBI taxonomy Id: 208223
Other names: CCUG 45998 A, CCUG 45998 B, CIP 107300, DSM 18146, Enterobacter cowanii, Enterobacter cowanii Inoue et al. 2001, JCM 10956, K. cowanii, Kosakonia cowanii (Inoue et al. 2001) Brady et al. 2013, LMG 23569, LMG:23569, NIH group 42, strain 888-76, strain KSK 246, strain UM-79
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