STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APZ05479.1Extensin; Derived by automated computational analysis using gene prediction method: Protein Homology. (227 aa)    
Predicted Functional Partners:
APZ06550.1
Virulence effector SrfC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.619
APZ04287.1
Conjugal transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.590
ddl-2
D-alanine--D-alanine ligase A; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
       0.543
APZ04809.1
DNA repair protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.541
APZ04191.1
Helix-turn-helix transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.510
APZ06548.1
ssrAB-activated protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.502
APZ07202.1
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.467
APZ06965.1
Protein NinG; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.466
APZ05480.1
Multidrug transporter subunit MdtG; Confers resistance to fosfomycin and deoxycholate; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.465
flgN
Flagellar biosynthesis protein FlgN; Export chaperone for FlgK and FlgL; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.459
Your Current Organism:
Kosakonia cowanii
NCBI taxonomy Id: 208223
Other names: CCUG 45998 A, CCUG 45998 B, CIP 107300, DSM 18146, Enterobacter cowanii, Enterobacter cowanii Inoue et al. 2001, JCM 10956, K. cowanii, Kosakonia cowanii (Inoue et al. 2001) Brady et al. 2013, LMG 23569, LMG:23569, NIH group 42, strain 888-76, strain KSK 246, strain UM-79
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