STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
wcaBSerine acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the transferase hexapeptide repeat family. (163 aa)    
Predicted Functional Partners:
cysK
Cysteine synthase A; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cysteine synthase/cystathionine beta- synthase family.
 
 0.961
wcaC
Colanic acid biosynthesis glycosyltransferase WcaC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.953
cysM
Cysteine synthase B; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cysteine synthase/cystathionine beta- synthase family.
 
 0.946
wcaE
Colanic acid biosynthesis glycosyltransferase WcaE; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.933
wcaD
Putative colanic acid polymerase WcaD; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.913
APZ05561.1
Cysteine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.904
APZ04609.1
Cystathionine beta-synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.877
cysS
cysteine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
  
 0.875
wcaA
Colanic acid biosynthesis glycosyltransferase WcaA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.871
wcaF
Colanic acid biosynthesis acetyltransferase WcaF; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.793
Your Current Organism:
Kosakonia cowanii
NCBI taxonomy Id: 208223
Other names: CCUG 45998 A, CCUG 45998 B, CIP 107300, DSM 18146, Enterobacter cowanii, Enterobacter cowanii Inoue et al. 2001, JCM 10956, K. cowanii, Kosakonia cowanii (Inoue et al. 2001) Brady et al. 2013, LMG 23569, LMG:23569, NIH group 42, strain 888-76, strain KSK 246, strain UM-79
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