Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cglBCompetence protein CglB; Identified by match to PFAM protein family HMM PF00482. (282 aa)    
Predicted Functional Partners:
cglA
Competence protein CglA; Identified by match to PFAM protein family HMM PF00437.
 
 
 0.998
SAG0165
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.989
SAG0166
Conserved domain protein; Similar to OMNI:NTL01SPL0084; identified by sequence similarity; putative.
       0.841
SAG0162
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
   
 0.832
celA
Competence protein CelA; Identified by match to PFAM protein family HMM PF00633.
  
  
 0.831
SAG0782
DNA internalization-related competence protein ComEC/Rec2; Identified by match to PFAM protein family HMM PF00753.
 
  
 0.808
SAG0336
Helicase, putative; Identified by match to PFAM protein family HMM PF00270.
   
  
 0.807
SAG0167
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
     0.806
SAG0469
Type IV prepilin peptidase-related protein; Similar to OMNI:SP1808; identified by sequence similarity; putative.
  
  
 0.691
ackA
Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.
       0.628
Your Current Organism:
Streptococcus agalactiae
NCBI taxonomy Id: 208435
Other names: S. agalactiae 2603V/R, Streptococcus agalactiae 2603V/R, Streptococcus agalactiae str. 2603V/R
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