Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SAG0650Identified by match to TIGR protein family HMM TIGR01076. (189 aa)    
Predicted Functional Partners:
SAG0645
Cell wall surface anchor family protein; Identified by match to PFAM protein family HMM PF00746; The product of this gene was detected by Western blot analysis. For details on the method see Tettelin et al. 2002.
 
   
 0.878
SAG0649
Cell wall surface anchor family protein, putative; Similar to OMNI:SP0462; identified by sequence similarity; putative; The product of this gene was detected by Western blot analysis. For details on the method see Tettelin et al. 2002.
 
     0.855
srtA
Sortase SrtA; Identified by match to TIGR protein family HMM TIGR01076.
 
   
 0.769
SAG1407
Cell wall surface anchor family protein; Identified by match to TIGR protein family HMM TIGR01167; The product of this gene was detected by Western blot analysis. For details on the method see Tettelin et al. 2002.
 
     0.768
SAG1408
Cell wall surface anchor family protein.
  
     0.744
SAG0646
Cell wall surface anchor family protein; Identified by match to TIGR protein family HMM TIGR01167; The product of this gene was detected by Western blot analysis. For details on the method see Tettelin et al. 2002.
 
     0.623
SAG1404
Cell wall surface anchor family protein; Identified by match to TIGR protein family HMM TIGR01167; The product of this gene was detected by Western blot analysis. For details on the method see Tettelin et al. 2002.
 
     0.520
SAG0651
Protein of unknown function; Identified by Glimmer2; putative; The product of this gene was detected by Western blot analysis. For details on the method see Tettelin et al. 2002.
       0.426
Your Current Organism:
Streptococcus agalactiae
NCBI taxonomy Id: 208435
Other names: S. agalactiae 2603V/R, Streptococcus agalactiae 2603V/R, Streptococcus agalactiae str. 2603V/R
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