Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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SAG0801Ribosomal small subunit pseudouridine synthase A, putative; Identified by match to PFAM protein family HMM PF00849; Belongs to the pseudouridine synthase RsuA family. (239 aa)    
Predicted Functional Partners:
exoA
Exodeoxyribonuclease; Identified by match to PFAM protein family HMM PF01260; In Gram negative bacteria, the apparent functional equivalent is known as exodeoxyribonuclease III (xth).
  
    0.734
der
Phosphoglycerate dehydrogenase-related protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
 
  
 0.705
cmk
Cytidylate kinase; Identified by match to PFAM protein family HMM PF02224.
 
  
 0.656
rplU
Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
 
 
   0.621
SAG0803
Identified by match to PFAM protein family HMM PF00083.
       0.589
SAG0800
Identified by match to PFAM protein family HMM PF00043.
       0.558
coiA
Competence protein CoiA; Similar to OMNI:SP0978; identified by sequence similarity; putative.
       0.558
pepB
Oligoendopeptidase B; Has oligopeptidase activity and degrades a variety of small bioactive peptides, including bradykinin, neurotensin, and peptide fragments of substance P and adrenocorticotropin. Also hydrolyzes the synthetic collagen-like substrate N-(3-[2-furyl]acryloyl)-Leu-Gly-Pro- Ala (FALGPA).
       0.528
rplT
Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
  
   0.507
scpB
Conserved hypothetical protein TIGR00281; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves.
  
  
 0.472
Your Current Organism:
Streptococcus agalactiae
NCBI taxonomy Id: 208435
Other names: S. agalactiae 2603V/R, Streptococcus agalactiae 2603V/R, Streptococcus agalactiae str. 2603V/R
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