SAG0844 protein (Streptococcus agalactiae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

SAG0844

Acetyltransferase, GNAT family; Identified by match to PFAM protein family HMM PF00583. (184 aa)

Predicted Functional Partners:

SAG0845

0.792

SAG0443

0.764

SAG0442

0.754

map

0.731

SAG0847

0.730

SAG0252

0.576

murA-1

0.565

Your Current Organism:

Streptococcus agalactiae

NCBI taxonomy Id: 208435
Other names: S. agalactiae 2603V/R, Streptococcus agalactiae 2603V/R, Streptococcus agalactiae str. 2603V/R

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SAG0252	SAG0442	SAG0252	SAG0442	Acetyltransferase, GNAT family; Identified by match to PFAM protein family HMM PF00583.	Acetyltransferase, GNAT family; Identified by match to PFAM protein family HMM PF00583.	0.714
SAG0252	SAG0443	SAG0252	SAG0443	Acetyltransferase, GNAT family; Identified by match to PFAM protein family HMM PF00583.	Acetyltransferase, GNAT family; Identified by match to PFAM protein family HMM PF00583.	0.707
SAG0252	SAG0844	SAG0252	SAG0844	Acetyltransferase, GNAT family; Identified by match to PFAM protein family HMM PF00583.	Acetyltransferase, GNAT family; Identified by match to PFAM protein family HMM PF00583.	0.576
SAG0442	SAG0252	SAG0442	SAG0252	Acetyltransferase, GNAT family; Identified by match to PFAM protein family HMM PF00583.	Acetyltransferase, GNAT family; Identified by match to PFAM protein family HMM PF00583.	0.714
SAG0442	SAG0443	SAG0442	SAG0443	Acetyltransferase, GNAT family; Identified by match to PFAM protein family HMM PF00583.	Acetyltransferase, GNAT family; Identified by match to PFAM protein family HMM PF00583.	0.539
SAG0442	SAG0844	SAG0442	SAG0844	Acetyltransferase, GNAT family; Identified by match to PFAM protein family HMM PF00583.	Acetyltransferase, GNAT family; Identified by match to PFAM protein family HMM PF00583.	0.754
SAG0443	SAG0252	SAG0443	SAG0252	Acetyltransferase, GNAT family; Identified by match to PFAM protein family HMM PF00583.	Acetyltransferase, GNAT family; Identified by match to PFAM protein family HMM PF00583.	0.707
SAG0443	SAG0442	SAG0443	SAG0442	Acetyltransferase, GNAT family; Identified by match to PFAM protein family HMM PF00583.	Acetyltransferase, GNAT family; Identified by match to PFAM protein family HMM PF00583.	0.539
SAG0443	SAG0844	SAG0443	SAG0844	Acetyltransferase, GNAT family; Identified by match to PFAM protein family HMM PF00583.	Acetyltransferase, GNAT family; Identified by match to PFAM protein family HMM PF00583.	0.764
SAG0844	SAG0252	SAG0844	SAG0252	Acetyltransferase, GNAT family; Identified by match to PFAM protein family HMM PF00583.	Acetyltransferase, GNAT family; Identified by match to PFAM protein family HMM PF00583.	0.576
SAG0844	SAG0442	SAG0844	SAG0442	Acetyltransferase, GNAT family; Identified by match to PFAM protein family HMM PF00583.	Acetyltransferase, GNAT family; Identified by match to PFAM protein family HMM PF00583.	0.754
SAG0844	SAG0443	SAG0844	SAG0443	Acetyltransferase, GNAT family; Identified by match to PFAM protein family HMM PF00583.	Acetyltransferase, GNAT family; Identified by match to PFAM protein family HMM PF00583.	0.764
SAG0844	SAG0845	SAG0844	SAG0845	Acetyltransferase, GNAT family; Identified by match to PFAM protein family HMM PF00583.	CBS domain protein; Identified by match to PFAM protein family HMM PF00571.	0.792
SAG0844	SAG0847	SAG0844	SAG0847	Acetyltransferase, GNAT family; Identified by match to PFAM protein family HMM PF00583.	Ribonuclease BN, putative; Identified by match to TIGR protein family HMM TIGR00765.	0.730
SAG0844	map	SAG0844	SAG0846	Acetyltransferase, GNAT family; Identified by match to PFAM protein family HMM PF00583.	Methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.	0.731
SAG0844	murA-1	SAG0844	SAG0843	Acetyltransferase, GNAT family; Identified by match to PFAM protein family HMM PF00583.	UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.	0.565
SAG0845	SAG0844	SAG0845	SAG0844	CBS domain protein; Identified by match to PFAM protein family HMM PF00571.	Acetyltransferase, GNAT family; Identified by match to PFAM protein family HMM PF00583.	0.792
SAG0845	SAG0847	SAG0845	SAG0847	CBS domain protein; Identified by match to PFAM protein family HMM PF00571.	Ribonuclease BN, putative; Identified by match to TIGR protein family HMM TIGR00765.	0.736
SAG0845	map	SAG0845	SAG0846	CBS domain protein; Identified by match to PFAM protein family HMM PF00571.	Methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.	0.793
SAG0845	murA-1	SAG0845	SAG0843	CBS domain protein; Identified by match to PFAM protein family HMM PF00571.	UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.	0.677