Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SAG0918Tn916, hypothetical protein; Identified by Glimmer2; putative. (76 aa)    
Predicted Functional Partners:
SAG0919
Tn916, hypothetical protein; Identified by Glimmer2; putative.
 
     0.951
SAG0921
Tn916, transcriptional regulator, putative; Identified by match to PFAM protein family HMM PF01381.
 
     0.837
xis
Tn916, excisionase; Similar to SP:P27452 GB:S56948 GB:X61025 PID:47462; identified by sequence similarity; putative.
 
     0.766
int
Tn916, transposase; Identified by match to PFAM protein family HMM PF00589; Belongs to the 'phage' integrase family.
  
     0.754
tetM
Tn916, tetracycline resistance protein; Identified by match to PFAM protein family HMM PF00009.
  
     0.700
SAG0925
Tn916, hypothetical protein; Identified by Glimmer2; putative.
  
     0.654
SAG2011
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.606
SAG0926
Identified by match to PFAM protein family HMM PF00877.
  
     0.588
SAG0927
Membrane protein, putative.
  
     0.528
SAG0935
Tn916, hypothetical protein; Identified by Glimmer2; putative.
  
     0.461
Your Current Organism:
Streptococcus agalactiae
NCBI taxonomy Id: 208435
Other names: S. agalactiae 2603V/R, Streptococcus agalactiae 2603V/R, Streptococcus agalactiae str. 2603V/R
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