SAG1902 protein (Streptococcus agalactiae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SAG1902

PTS system, IIA component. (144 aa)

Predicted Functional Partners:

SAG1898

0.993

SAG1900

0.993

SAG1899

0.988

SAG0359

0.967

manM

0.965

SAG1948

0.964

SAG1950

0.959

SAG1949

0.952

SAG1346

0.938

ptsH

0.879

Your Current Organism:

Streptococcus agalactiae

NCBI taxonomy Id: 208435
Other names: S. agalactiae 2603V/R, Streptococcus agalactiae 2603V/R, Streptococcus agalactiae str. 2603V/R

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SAG0359	SAG1346	SAG0359	SAG1346	PTS system, mannose-specific IID component.	PTS system, fructose specific IIABC components; Identified by match to PFAM protein family HMM PF00359.	0.956
SAG0359	SAG1899	SAG0359	SAG1899	PTS system, mannose-specific IID component.	PTS system, IIC component.	0.941
SAG0359	SAG1900	SAG0359	SAG1900	PTS system, mannose-specific IID component.	PTS system, IIB component.	0.950
SAG0359	SAG1902	SAG0359	SAG1902	PTS system, mannose-specific IID component.	PTS system, IIA component.	0.967
SAG0359	SAG1948	SAG0359	SAG1948	PTS system, mannose-specific IID component.	PTS system, IID component.	0.684
SAG0359	SAG1949	SAG0359	SAG1949	PTS system, mannose-specific IID component.	PTS system, IIC component.	0.991
SAG0359	SAG1950	SAG0359	SAG1950	PTS system, mannose-specific IID component.	PTS system, IIB component.	0.947
SAG0359	manM	SAG0359	SAG0360	PTS system, mannose-specific IID component.	PTS system, mannose-specific IIC component.	0.999
SAG0359	ptsH	SAG0359	SAG0821	PTS system, mannose-specific IID component.	Phosphocarrier protein HPr; Identified by match to PFAM protein family HMM PF00381.	0.660
SAG1346	SAG0359	SAG1346	SAG0359	PTS system, fructose specific IIABC components; Identified by match to PFAM protein family HMM PF00359.	PTS system, mannose-specific IID component.	0.956
SAG1346	SAG1898	SAG1346	SAG1898	PTS system, fructose specific IIABC components; Identified by match to PFAM protein family HMM PF00359.	PTS system, IID component.	0.956
SAG1346	SAG1899	SAG1346	SAG1899	PTS system, fructose specific IIABC components; Identified by match to PFAM protein family HMM PF00359.	PTS system, IIC component.	0.958
SAG1346	SAG1900	SAG1346	SAG1900	PTS system, fructose specific IIABC components; Identified by match to PFAM protein family HMM PF00359.	PTS system, IIB component.	0.931
SAG1346	SAG1902	SAG1346	SAG1902	PTS system, fructose specific IIABC components; Identified by match to PFAM protein family HMM PF00359.	PTS system, IIA component.	0.938
SAG1346	SAG1948	SAG1346	SAG1948	PTS system, fructose specific IIABC components; Identified by match to PFAM protein family HMM PF00359.	PTS system, IID component.	0.956
SAG1346	SAG1949	SAG1346	SAG1949	PTS system, fructose specific IIABC components; Identified by match to PFAM protein family HMM PF00359.	PTS system, IIC component.	0.958
SAG1346	SAG1950	SAG1346	SAG1950	PTS system, fructose specific IIABC components; Identified by match to PFAM protein family HMM PF00359.	PTS system, IIB component.	0.931
SAG1346	manM	SAG1346	SAG0360	PTS system, fructose specific IIABC components; Identified by match to PFAM protein family HMM PF00359.	PTS system, mannose-specific IIC component.	0.958
SAG1346	ptsH	SAG1346	SAG0821	PTS system, fructose specific IIABC components; Identified by match to PFAM protein family HMM PF00359.	Phosphocarrier protein HPr; Identified by match to PFAM protein family HMM PF00381.	0.996
SAG1898	SAG1346	SAG1898	SAG1346	PTS system, IID component.	PTS system, fructose specific IIABC components; Identified by match to PFAM protein family HMM PF00359.	0.956