Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SAG1910Transcriptional regulator, MarR family; Identified by match to PFAM protein family HMM PF01047. (141 aa)    
Predicted Functional Partners:
SAG0192
PTS system, IIABC components; Identified by match to PFAM protein family HMM PF00358.
   
 
 0.727
SAG0790
PTS system, beta-glucosides-specific IIABC components; Identified by match to PFAM protein family HMM PF00358.
   
 
 0.727
SAG1690
PTS system, IIABC components; Identified by match to PFAM protein family HMM PF00358.
   
 
 0.727
SAG1959
PTS system, IIABC components; Identified by match to PFAM protein family HMM PF00358.
   
 
 0.727
polC
DNA polymerase III, alpha subunit, Gram-positive type; Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity.
     
 0.668
SAG1909
Identified by match to PFAM protein family HMM PF00881.
     
 0.546
SAG0282
PTS system, IIBC components; Identified by match to PFAM protein family HMM PF00367.
     
 0.498
SAG2130
Amino acid ABC transporter, amino acid-binding protein/permease protein; Identified by match to PFAM protein family HMM PF00528.
  
  
 0.437
Your Current Organism:
Streptococcus agalactiae
NCBI taxonomy Id: 208435
Other names: S. agalactiae 2603V/R, Streptococcus agalactiae 2603V/R, Streptococcus agalactiae str. 2603V/R
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