STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Cooccurrence
Coexpression
Experiments
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[Homology]
Score
SAG1912N-acetylmuramoyl-L-alanine amidase, family 4 protein; Identified by match to PFAM protein family HMM PF01832. (194 aa)    
Predicted Functional Partners:
SAG1710
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.562
SAG1626
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.508
SAG1842
Prophage LambdaSa2, PblB, putative; Similar to GP:10732859; identified by sequence similarity; putative; PblB is a platelet adhesin. This version contains a 200aa insert that shows similarity (32% identity, 44% similarity over 95 residues) to SP|Q9TL08 a chloroplast enzyme which converts protoporphyrin IX (a hemoglobin precursor) into cholorophyll.
   
   0.505
polC
DNA polymerase III, alpha subunit, Gram-positive type; Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity.
       0.501
proS
prolyl-tRNA synthetase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves dea [...]
       0.499
SAG0596
Prophage LambdaSa1, pblA protein, internal deletion; Similar to GP:10732857; identified by sequence similarity; putative.
   
   0.484
SAG1084
Identified by match to PFAM protein family HMM PF01226.
 
   
 0.462
Your Current Organism:
Streptococcus agalactiae
NCBI taxonomy Id: 208435
Other names: S. agalactiae 2603V/R, Streptococcus agalactiae 2603V/R, Streptococcus agalactiae str. 2603V/R
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