Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SAG1920Citrate carrier protein, CCS family; Identified by match to PFAM protein family HMM PF03390. (445 aa)    
Predicted Functional Partners:
SAG1919
Malate oxidoreductase; Identified by match to PFAM protein family HMM PF00390.
 
  
 0.925
SAG1921
Sensor histidine kinase; Similar to OMNI:NTL01SPL0863; identified by sequence similarity; putative.
 
  
 0.876
SAG1922
Response regulator; Identified by match to PFAM protein family HMM PF00072.
 
  
 0.771
SAG1918
Bacteriocin transport accessory protein, putative; The product of this gene was detected by Western blot analysis. For details on the method see Tettelin et al. 2002.
       0.414
SAG0790
PTS system, beta-glucosides-specific IIABC components; Identified by match to PFAM protein family HMM PF00358.
  
   
 0.409
SAG1690
PTS system, IIABC components; Identified by match to PFAM protein family HMM PF00358.
  
   
 0.406
Your Current Organism:
Streptococcus agalactiae
NCBI taxonomy Id: 208435
Other names: S. agalactiae 2603V/R, Streptococcus agalactiae 2603V/R, Streptococcus agalactiae str. 2603V/R
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