Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
SAG1933PTS system, IIC component, putative. (482 aa)    
Predicted Functional Partners:
SAG1935
PTS system, IIA component, putative.
 
 
 0.983
SAG1934
PTS system, IIB component, putative; Similar to OMNI:NTL01SPL1345; identified by sequence similarity; putative.
 
 
 0.981
lacD
Tagatose 1,6-diphosphate aldolase; Identified by match to TIGR protein family HMM TIGR01232; Belongs to the aldolase LacD family.
 
  
  0.773
ptsH
Phosphocarrier protein HPr; Identified by match to PFAM protein family HMM PF00381.
    
  0.709
lacB
Galactose-6-phosphate isomerase, LacB subunit; Identified by match to PFAM protein family HMM PF02502.
 
     0.700
lacA
Galactose-6-phosphate isomerase, LacA subunit; Identified by match to PFAM protein family HMM PF02502.
 
   
 0.608
SAG1346
PTS system, fructose specific IIABC components; Identified by match to PFAM protein family HMM PF00359.
  
 
 0.582
lacR-2
Lactose phosphotransferase system repressor; Identified by match to PFAM protein family HMM PF00455.
 
    0.551
SAG1814
PTS system, IIB component; Similar to OMNI:SP2037; identified by sequence similarity; putative.
 
 
 0.510
SAG0194
Transcriptional antiterminator, BglG family; Identified by match to PFAM protein family HMM PF00359.
 
 
 0.499
Your Current Organism:
Streptococcus agalactiae
NCBI taxonomy Id: 208435
Other names: S. agalactiae 2603V/R, Streptococcus agalactiae 2603V/R, Streptococcus agalactiae str. 2603V/R
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