Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SAG1946DNA-binding response regulator; Identified by match to PFAM protein family HMM PF00072. (257 aa)    
Predicted Functional Partners:
SAG1947
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
 
 0.993
SAG1945
Iron ABC transporter, iron-binding protein; Identified by match to PFAM protein family HMM PF01547.
 
     0.929
SAG0394
Sensor histidine kinase; Identified by match to PFAM protein family HMM PF00512.
 
  
 0.842
ribA
Riboflavin biosynthesis protein RibA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
     
  0.836
SAG0644
Transcriptional regulator, AraC family; Identified by match to PFAM protein family HMM PF00165.
 
  
  0.676
SAG0124
Sensor histidine kinase; Identified by match to PFAM protein family HMM PF00512.
 
  
  0.636
SAG1922
Response regulator; Identified by match to PFAM protein family HMM PF00072.
  
  
 0.585
SAG0123
DNA-binding response regulator; Identified by match to PFAM protein family HMM PF00072.
  
  
 0.574
SAG0322
DNA-binding response regulator; Identified by match to PFAM protein family HMM PF00072.
 
  
 0.565
SAG1017
Sensor histidine kinase, putative; Identified by match to PFAM protein family HMM PF02518.
 
 
 0.557
Your Current Organism:
Streptococcus agalactiae
NCBI taxonomy Id: 208435
Other names: S. agalactiae 2603V/R, Streptococcus agalactiae 2603V/R, Streptococcus agalactiae str. 2603V/R
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