STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SAG1947Conserved hypothetical protein; Identified by Glimmer2; putative. (549 aa)    
Predicted Functional Partners:
SAG1945
Iron ABC transporter, iron-binding protein; Identified by match to PFAM protein family HMM PF01547.
 
 
  0.994
SAG1946
DNA-binding response regulator; Identified by match to PFAM protein family HMM PF00072.
 
 
 0.993
lytR
Response regulator; Member of the two-component regulatory system LytR/LytS that probably regulates genes involved in cell wall metabolism.
 
 
 0.886
SAG1016
Response regulator; Identified by match to PFAM protein family HMM PF00072.
 
 
 0.886
rbsB
Ribose ABC transporter, periplasmic D-ribose-binding protein; Identified by match to PFAM protein family HMM PF00532.
  
 
 0.863
SAG1017
Sensor histidine kinase, putative; Identified by match to PFAM protein family HMM PF02518.
 
  
 
0.604
lytS
Sensor histidine kinase, putative; Member of the two-component regulatory system LytR/LytS that probably regulates genes involved in cell wall metabolism.
 
  
 
0.602
SAG1957
Response regulator; Identified by match to PFAM protein family HMM PF00072.
 
 
 0.582
SAG0644
Transcriptional regulator, AraC family; Identified by match to PFAM protein family HMM PF00165.
 
  
  0.579
SAG1921
Sensor histidine kinase; Similar to OMNI:NTL01SPL0863; identified by sequence similarity; putative.
  
  
 0.567
Your Current Organism:
Streptococcus agalactiae
NCBI taxonomy Id: 208435
Other names: S. agalactiae 2603V/R, Streptococcus agalactiae 2603V/R, Streptococcus agalactiae str. 2603V/R
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.