Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SAG1954Membrane protein, putative; Identified by Glimmer2; putative. (384 aa)    
Predicted Functional Partners:
SAG1955
ABC transporter, ATP-binding protein; Identified by match to PFAM protein family HMM PF00005.
 
  0.945
SAG1980
ABC transporter, ATP-binding protein; Identified by match to PFAM protein family HMM PF00005.
 
  0.578
SAG2035
ABC transporter, ATP-binding protein; Identified by match to PFAM protein family HMM PF00005.
 
  0.574
SAG1487
ABC transporter, ATP binding protein; Identified by match to PFAM protein family HMM PF00005.
 
  0.540
SAG1816
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.482
SAG0260
ABC transporter, ATP-binding protein; Identified by match to PFAM protein family HMM PF00005.
  
  0.480
SAG0280
ABC transporter, ATP-binding protein; Identified by match to PFAM protein family HMM PF00005.
  
  0.480
SAG0308
ABC transporter, ATP-binding protein; Identified by match to PFAM protein family HMM PF00005.
  
  0.480
SAG0373
ABC transporter, ATP-binding protein; Identified by match to PFAM protein family HMM PF00005.
  
  0.480
cylA
cylA protein; Identified by match to PFAM protein family HMM PF00005.
  
  0.480
Your Current Organism:
Streptococcus agalactiae
NCBI taxonomy Id: 208435
Other names: S. agalactiae 2603V/R, Streptococcus agalactiae 2603V/R, Streptococcus agalactiae str. 2603V/R
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