Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SAG1955ABC transporter, ATP-binding protein; Identified by match to PFAM protein family HMM PF00005. (282 aa)    
Predicted Functional Partners:
SAG1954
Membrane protein, putative; Identified by Glimmer2; putative.
 
  0.945
SAG1979
Membrane protein, putative; Identified by Glimmer2; putative.
 
  0.635
SAG2034
Membrane protein, putative; Similar to OMNI:NTL01BH0292; identified by sequence similarity; putative.
 
  0.621
SAG0309
ABC transporter, permease protein, putative.
 
 
 0.554
SAG0259
ABC transporter efflux protein, DrrB family, putative.
  
 
 0.527
cylB
cylB protein.
  
 
 0.527
SAG0938
Transcriptional regulator, GntR family; Identified by match to PFAM protein family HMM PF00392.
 
  
 0.509
atpC
ATP synthase F1, epsilon subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane.
   
   0.494
atpD
ATP synthase F1, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family.
    
   0.466
SAG2032
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
    0.426
Your Current Organism:
Streptococcus agalactiae
NCBI taxonomy Id: 208435
Other names: S. agalactiae 2603V/R, Streptococcus agalactiae 2603V/R, Streptococcus agalactiae str. 2603V/R
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