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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SAG1979Membrane protein, putative; Identified by Glimmer2; putative. (253 aa)    
Predicted Functional Partners:
SAG1980
ABC transporter, ATP-binding protein; Identified by match to PFAM protein family HMM PF00005.
 
 0.982
SAG1982
Transcriptional regulator, Cro/CI family; Identified by match to PFAM protein family HMM PF01381.
 
     0.942
SAG2035
ABC transporter, ATP-binding protein; Identified by match to PFAM protein family HMM PF00005.
 
 0.926
SAG1981
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.843
SAG1955
ABC transporter, ATP-binding protein; Identified by match to PFAM protein family HMM PF00005.
 
 0.780
SAG1487
ABC transporter, ATP binding protein; Identified by match to PFAM protein family HMM PF00005.
 
 0.760
SAG2037
Transcriptional regulator, Cro/CI family; Identified by match to PFAM protein family HMM PF01381.
 
     0.718
SAG0260
ABC transporter, ATP-binding protein; Identified by match to PFAM protein family HMM PF00005.
  
 0.696
SAG0308
ABC transporter, ATP-binding protein; Identified by match to PFAM protein family HMM PF00005.
  
 0.696
cylA
cylA protein; Identified by match to PFAM protein family HMM PF00005.
  
 0.696
Your Current Organism:
Streptococcus agalactiae
NCBI taxonomy Id: 208435
Other names: S. agalactiae 2603V/R, Streptococcus agalactiae 2603V/R, Streptococcus agalactiae str. 2603V/R
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.