Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
SAG1982Transcriptional regulator, Cro/CI family; Identified by match to PFAM protein family HMM PF01381. (359 aa)    
Predicted Functional Partners:
SAG1979
Membrane protein, putative; Identified by Glimmer2; putative.
 
     0.943
SAG1980
ABC transporter, ATP-binding protein; Identified by match to PFAM protein family HMM PF00005.
 
     0.899
SAG1981
Hypothetical protein; Identified by Glimmer2; putative.
       0.786
SAG2034
Membrane protein, putative; Similar to OMNI:NTL01BH0292; identified by sequence similarity; putative.
 
     0.764
SAG2035
ABC transporter, ATP-binding protein; Identified by match to PFAM protein family HMM PF00005.
 
     0.582
SAG0975
ABC transporter, permease protein, putative; Similar to OMNI:NTL01LL1789; identified by sequence similarity; putative.
  
    0.483
lacD
Tagatose 1,6-diphosphate aldolase; Identified by match to TIGR protein family HMM TIGR01232; Belongs to the aldolase LacD family.
    
  0.401
Your Current Organism:
Streptococcus agalactiae
NCBI taxonomy Id: 208435
Other names: S. agalactiae 2603V/R, Streptococcus agalactiae 2603V/R, Streptococcus agalactiae str. 2603V/R
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