Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
SAG2002IS1381, transposase OrfB; Identified by match to PFAM protein family HMM PF01609. (129 aa)    
Predicted Functional Partners:
SAG2003
IS1381, transposase OrfA; Similar to OMNI:SP0537; identified by sequence similarity; putative.
 
     0.922
SAG0262
IS1381, transposase OrfA; Similar to OMNI:SP0537; identified by sequence similarity; putative.
  
     0.774
SAG0542
IS1381, transposase OrfA; Similar to OMNI:SP0537; identified by sequence similarity; putative.
  
     0.774
SAG0965
IS1381, transposase OrfA; Similar to OMNI:SP0537; identified by sequence similarity; putative.
  
     0.774
SAG1458
IS1381, transposase OrfA; Similar to OMNI:SP0537; identified by sequence similarity; putative.
  
     0.774
SAG1549
IS1381, transposase OrfA; Similar to OMNI:SP0537; identified by sequence similarity; putative.
  
     0.774
SAG2001
Conjugal transfer protein, interruption-C; This gene is interrupted by an IS1381 element.
       0.628
SAG2000
Membrane protein, putative; Similar to GP:6782407; identified by sequence similarity; putative.
       0.603
Your Current Organism:
Streptococcus agalactiae
NCBI taxonomy Id: 208435
Other names: S. agalactiae 2603V/R, Streptococcus agalactiae 2603V/R, Streptococcus agalactiae str. 2603V/R
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