Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SAG2005Conserved hypothetical protein; Identified by Glimmer2; putative. (136 aa)    
Predicted Functional Partners:
SAG2007
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
    0.864
SAG2006
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.837
SAG2001
Conjugal transfer protein, interruption-C; This gene is interrupted by an IS1381 element.
  
    0.745
SAG0932
Tn916, transcriptional regulator, putative; Identified by match to PFAM protein family HMM PF01381.
  
  
 0.575
SAG1988
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.575
SAG2114
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.575
SAG2008
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.568
SAG2009
Conserved hypothetical protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
       0.567
SAG2017
Transcriptional regulator, Cro/CI family; Identified by match to PFAM protein family HMM PF01381.
  
    0.552
SAG2012
Hypothetical protein; Identified by Glimmer2; putative.
       0.540
Your Current Organism:
Streptococcus agalactiae
NCBI taxonomy Id: 208435
Other names: S. agalactiae 2603V/R, Streptococcus agalactiae 2603V/R, Streptococcus agalactiae str. 2603V/R
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