Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rpmFRibosomal protein L32; Identified by match to TIGR protein family HMM TIGR01031; Belongs to the bacterial ribosomal protein bL32 family. (60 aa)    
Predicted Functional Partners:
rpsB
Ribosomal protein S2; Identified by match to PFAM protein family HMM PF00318; Belongs to the universal ribosomal protein uS2 family.
  
 0.997
rpmB
Ribosomal protein L28; Identified by match to PFAM protein family HMM PF00830; Belongs to the bacterial ribosomal protein bL28 family.
  
 
 0.996
rpsO
Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.
  
 
 0.996
rpsT
Ribosomal protein S20; Binds directly to 16S ribosomal RNA.
   
 
 0.996
rpsP
Ribosomal protein S16; Identified by match to PFAM protein family HMM PF00886; Belongs to the bacterial ribosomal protein bS16 family.
  
 
 0.996
rplU
Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
  
 0.996
rpmI
Ribosomal protein L35; Identified by match to PFAM protein family HMM PF01632; Belongs to the bacterial ribosomal protein bL35 family.
  
 
 0.996
rpmG-3
Ribosomal protein L33; Identified by match to PFAM protein family HMM PF00471; Belongs to the bacterial ribosomal protein bL33 family.
  
 
 0.996
rpsM
Ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family.
  
 
 0.995
rplS
Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
  
 0.995
Your Current Organism:
Streptococcus agalactiae
NCBI taxonomy Id: 208435
Other names: S. agalactiae 2603V/R, Streptococcus agalactiae 2603V/R, Streptococcus agalactiae str. 2603V/R
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