STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AIG77248.1AraC family transcriptional regulator. (288 aa)    
Predicted Functional Partners:
AIG77249.1
Hypothetical protein.
 
     0.651
AIG77171.1
Hypothetical protein.
  
     0.573
AIG80624.1
Hypothetical protein.
  
     0.486
AIG80165.1
Conserved putative secreted protein.
  
     0.476
AIG80160.1
Conserved putative secreted protein.
  
     0.468
AIG80154.1
Conserved putative membrane protein.
  
     0.466
AIG80159.1
Conserved putative secreted protein.
  
     0.466
AIG77250.1
Hypothetical protein.
       0.457
Your Current Organism:
Amycolatopsis japonica
NCBI taxonomy Id: 208439
Other names: A. japonica, Amycolatopsis japonicum, CIP 106801, DSM 44213, JCM 10140, NRRL B-24138, strain MG417-CF17
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.