STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AIG78172.1Hypothetical protein. (204 aa)    
Predicted Functional Partners:
AIG78173.1
Conserved putative secreted protein.
       0.771
AIG78171.1
Long-chain specific acyl-CoA dehydrogenase.
       0.543
AIG78174.1
Conserved putative membrane protein.
       0.520
AIG78170.1
alpha-methylacyl-CoA racemase; Belongs to the CoA-transferase III family.
  
    0.491
AIG74016.1
TetR family transcriptional regulator.
  
   
 0.413
AIG78045.1
Hypothetical protein.
  
     0.400
Your Current Organism:
Amycolatopsis japonica
NCBI taxonomy Id: 208439
Other names: A. japonica, Amycolatopsis japonicum, CIP 106801, DSM 44213, JCM 10140, NRRL B-24138, strain MG417-CF17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.