STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AIG79759.1Hydroxymethylglutaryl-CoA lyase. (310 aa)    
Predicted Functional Partners:
acsA1
Acetyl-coenzyme A synthetase 1.
 
 
 0.935
korA
2-oxoglutarate oxidoreductase subunit KorA.
  
 
 0.935
AIG78704.1
Hypothetical protein.
  
 0.921
paaJ
3-oxoadipyl-CoA/3-oxo-5, 6-dehydrosuberyl-CoAthiolase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.918
fadA
Putative acyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.918
AIG74435.1
Putative acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.918
phbA
Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.918
AIG77995.1
Beta-ketoadipyl CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.918
AIG78081.1
Hypothetical protein.
  
 
 0.918
atoB
Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.918
Your Current Organism:
Amycolatopsis japonica
NCBI taxonomy Id: 208439
Other names: A. japonica, Amycolatopsis japonicum, CIP 106801, DSM 44213, JCM 10140, NRRL B-24138, strain MG417-CF17
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