STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AIG80933.1GntR family transcriptional regulator. (302 aa)    
Predicted Functional Partners:
AIG80932.1
Hypothetical protein.
       0.773
AIG80934.1
Hypothetical protein.
 
     0.708
AIG73540.1
Hypothetical protein.
  
    0.660
AIG80931.1
Putative membrane protein.
       0.548
AIG79360.1
Hypothetical protein.
  
    0.530
AIG79343.1
Hypothetical protein.
  
    0.523
AIG79482.1
TetR family transcriptional regulator.
  
    0.497
AIG79275.1
Hypothetical protein.
  
     0.470
AIG80185.1
Hypothetical protein.
 
     0.462
AIG78577.1
Hypothetical protein.
 
     0.454
Your Current Organism:
Amycolatopsis japonica
NCBI taxonomy Id: 208439
Other names: A. japonica, Amycolatopsis japonicum, CIP 106801, DSM 44213, JCM 10140, NRRL B-24138, strain MG417-CF17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.