STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEB32858.1Uncharacterized conserved protein, DUF58 family, contains vWF domain. (430 aa)    
Predicted Functional Partners:
SEB32865.1
Protein of unknown function.
 
  
 0.959
SEB32862.1
MoxR-like ATPase.
 
  
 0.939
SEB32870.1
Protein of unknown function.
 
  
 0.938
SEB32873.1
Hypothetical protein.
 
     0.935
SEB32853.1
Uncharacterized membrane protein SpoIIM, required for sporulation.
 
  
 0.849
SEB32850.1
Uncharacterized membrane protein YckC, RDD family.
 
    0.791
purD
Phosphoribosylamine--glycine ligase; Belongs to the GARS family.
      
 0.674
egtD
L-histidine Nalpha-methyltransferase; Catalyzes the SAM-dependent triple methylation of the alpha- amino group of histidine to form hercynine, a step in the biosynthesis pathway of ergothioneine; Belongs to the methyltransferase superfamily. EgtD family.
      
 0.670
SED56965.1
Hypothetical protein.
   
    0.636
SED78794.1
Anion-transporting ATPase, ArsA/GET3 family.
      
 0.544
Your Current Organism:
Amycolatopsis tolypomycina
NCBI taxonomy Id: 208445
Other names: A. tolypomycina, ATCC 21177, Amycolatopsis tolypomycina Wink et al. 2003, Amycolatopsis tolypophora, Amycolatopsis tolypophorous, DSM 44544, IFO 14664, IMSNU 20061, JCM 4936, NBRC 14664, NRRL B-24205, Streptomyces tolypophorus
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