STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEB41670.1Putative copper resistance protein D. (342 aa)    
Predicted Functional Partners:
SEB41680.1
Hypothetical protein.
 
  
 0.924
SEB41690.1
Uncharacterized protein YcnI.
 
  
 0.922
SEB41700.1
Hypothetical protein.
 
     0.794
SEB38286.1
Hypothetical protein.
  
     0.701
SEB38135.1
Hypothetical protein.
  
     0.637
SEC28783.1
Hypothetical protein.
  
     0.637
SED51391.1
Hypothetical protein.
  
     0.623
SEC03248.1
Hypothetical protein.
  
     0.619
SEB28912.1
Protein of unknown function.
  
     0.606
SEB29242.1
Hypothetical protein.
  
     0.603
Your Current Organism:
Amycolatopsis tolypomycina
NCBI taxonomy Id: 208445
Other names: A. tolypomycina, ATCC 21177, Amycolatopsis tolypomycina Wink et al. 2003, Amycolatopsis tolypophora, Amycolatopsis tolypophorous, DSM 44544, IFO 14664, IMSNU 20061, JCM 4936, NBRC 14664, NRRL B-24205, Streptomyces tolypophorus
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