STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEB44958.1Hydrogenase maturation protease. (155 aa)    
Predicted Functional Partners:
SEC63467.1
Hydrogenase maturation protein HypF.
 
   
 0.842
SEC63419.1
Hydrogenase expression/formation protein HypD.
 
   
 0.841
SEC63395.1
Hydrogenase expression/formation protein HypE.
 
   
 0.839
SEC63448.1
Hydrogenase expression/formation protein HypC.
 
  
 0.829
SEC63546.1
Coenzyme F420-reducing hydrogenase, gamma subunit.
 
 
 0.700
SEB44970.1
Hypothetical protein.
       0.651
gpmA
2,3-bisphosphoglycerate-dependent phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
    
   0.637
SED22677.1
2,3-bisphosphoglycerate-dependent phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
    
   0.637
SEC51091.1
NADH dehydrogenase, FAD-containing subunit.
    
 
 0.624
SEC66139.1
Sulfide:quinone oxidoreductase.
    
 
 0.624
Your Current Organism:
Amycolatopsis tolypomycina
NCBI taxonomy Id: 208445
Other names: A. tolypomycina, ATCC 21177, Amycolatopsis tolypomycina Wink et al. 2003, Amycolatopsis tolypophora, Amycolatopsis tolypophorous, DSM 44544, IFO 14664, IMSNU 20061, JCM 4936, NBRC 14664, NRRL B-24205, Streptomyces tolypophorus
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