STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEC03275.1DNA-binding response regulator, LytR/AlgR family. (251 aa)    
Predicted Functional Partners:
SEC03310.1
Two-component system, LytT family, sensor kinase.
 
 0.991
SEB42076.1
Two-component system, LytT family, sensor kinase.
 
 0.960
SEC03248.1
Hypothetical protein.
 
     0.908
SEC03226.1
Sodium:solute symporter family protein; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
     0.841
SED33181.1
Signal transduction histidine kinase; Manually curated.
    
 0.753
SEB42135.1
Hypothetical protein.
 
     0.709
SEB42147.1
Sodium:solute symporter family protein; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
     0.632
SED15831.1
PAS domain S-box-containing protein.
 
  
 0.630
SED41577.1
Glutamate-5-semialdehyde dehydrogenase.
    
   0.630
SEC03347.1
Hypothetical protein.
       0.623
Your Current Organism:
Amycolatopsis tolypomycina
NCBI taxonomy Id: 208445
Other names: A. tolypomycina, ATCC 21177, Amycolatopsis tolypomycina Wink et al. 2003, Amycolatopsis tolypophora, Amycolatopsis tolypophorous, DSM 44544, IFO 14664, IMSNU 20061, JCM 4936, NBRC 14664, NRRL B-24205, Streptomyces tolypophorus
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