STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEC49352.1Regulatory protein, luxR family. (883 aa)    
Predicted Functional Partners:
SEB43978.1
Hypothetical protein.
  
     0.623
SEC31182.1
Hypothetical protein.
  
     0.613
SEC08280.1
Short repeat-containing protein of unknown function.
  
     0.608
SEC49318.1
Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein.
       0.553
SEB29252.1
Hypothetical protein.
  
     0.535
SED00767.1
Polyketide cyclase / dehydrase and lipid transport.
  
     0.530
SEB45850.1
Hypothetical protein.
  
     0.507
SEB33566.1
Hypothetical protein.
  
     0.464
SEC49377.1
AAA ATPase domain-containing protein.
 
  
 
0.451
SED49683.1
Polyketide cyclase / dehydrase and lipid transport.
  
     0.448
Your Current Organism:
Amycolatopsis tolypomycina
NCBI taxonomy Id: 208445
Other names: A. tolypomycina, ATCC 21177, Amycolatopsis tolypomycina Wink et al. 2003, Amycolatopsis tolypophora, Amycolatopsis tolypophorous, DSM 44544, IFO 14664, IMSNU 20061, JCM 4936, NBRC 14664, NRRL B-24205, Streptomyces tolypophorus
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