STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEC82877.1Alpha/beta hydrolase family protein. (245 aa)    
Predicted Functional Partners:
SEC82927.1
Effector-binding domain-containing protein.
 
     0.817
SEC81679.1
Polyketide synthase 5.
  
 0.784
SEC82851.1
RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family.
       0.773
SEC82912.1
Uncharacterized conserved protein.
       0.773
SEC82830.1
DNA-binding transcriptional regulator, AcrR family.
       0.709
SEB30107.1
Rifamycin polyketide synthase modules 1, 2 and 3.
  
 0.690
SEC57206.1
Amino acid adenylation domain-containing protein.
   
 0.672
SEC85227.1
Phosphopantetheine attachment site.
   
 0.661
SEC85280.1
Phosphopantetheine attachment site.
   
 0.661
SEC49523.1
Amino acid adenylation domain-containing protein.
   
  0.653
Your Current Organism:
Amycolatopsis tolypomycina
NCBI taxonomy Id: 208445
Other names: A. tolypomycina, ATCC 21177, Amycolatopsis tolypomycina Wink et al. 2003, Amycolatopsis tolypophora, Amycolatopsis tolypophorous, DSM 44544, IFO 14664, IMSNU 20061, JCM 4936, NBRC 14664, NRRL B-24205, Streptomyces tolypophorus
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