STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEC93296.1Regulatory protein, Fis family. (597 aa)    
Predicted Functional Partners:
SEC93244.1
Propane monooxygenase large subunit.
 
   
 0.877
SEC93183.1
Propane monooxygenase coupling protein.
 
     0.848
SED51889.1
Dihydroxyacetone kinase DhaL subunit.
   
 
 0.847
SED51911.1
Dihydroxyacetone kinase DhaK subunit.
   
 
 0.847
SEC93204.1
Propane monooxygenase small subunit.
 
     0.843
SEC93215.1
Propane monooxygenase reductase subunit.
 
     0.800
SEC93144.1
Metal-sulfur cluster biosynthetic enzyme.
 
     0.777
SEC93273.1
Hypothetical protein.
       0.593
SEC93112.1
NAD+-dependent secondary alcohol dehydrogenase Adh1.
 
    0.538
Your Current Organism:
Amycolatopsis tolypomycina
NCBI taxonomy Id: 208445
Other names: A. tolypomycina, ATCC 21177, Amycolatopsis tolypomycina Wink et al. 2003, Amycolatopsis tolypophora, Amycolatopsis tolypophorous, DSM 44544, IFO 14664, IMSNU 20061, JCM 4936, NBRC 14664, NRRL B-24205, Streptomyces tolypophorus
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