Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SEB34966.1 | SEC96201.1 | SAMN04489727_1101 | SAMN04489727_5772 | DNA-directed RNA polymerase subunit beta'. | RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily. | 0.444 |
SEB34966.1 | rpoA | SAMN04489727_1101 | SAMN04489727_1048 | DNA-directed RNA polymerase subunit beta'. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
SEB34966.1 | rpoB | SAMN04489727_1101 | SAMN04489727_0317 | DNA-directed RNA polymerase subunit beta'. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
SEB34966.1 | rpoZ | SAMN04489727_1101 | SAMN04489727_3512 | DNA-directed RNA polymerase subunit beta'. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.998 |
SEC96133.1 | SEC96160.1 | SAMN04489727_5769 | SAMN04489727_5770 | Amino acid transporter. | L,D-transpeptidase catalytic domain. | 0.547 |
SEC96133.1 | SEC96181.1 | SAMN04489727_5769 | SAMN04489727_5771 | Amino acid transporter. | Release factor glutamine methyltransferase. | 0.532 |
SEC96133.1 | SEC96201.1 | SAMN04489727_5769 | SAMN04489727_5772 | Amino acid transporter. | RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily. | 0.456 |
SEC96133.1 | SEC96227.1 | SAMN04489727_5769 | SAMN04489727_5773 | Amino acid transporter. | methylated-DNA-[protein]-cysteine S-methyltransferase; Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated. | 0.456 |
SEC96160.1 | SEC96133.1 | SAMN04489727_5770 | SAMN04489727_5769 | L,D-transpeptidase catalytic domain. | Amino acid transporter. | 0.547 |
SEC96160.1 | SEC96181.1 | SAMN04489727_5770 | SAMN04489727_5771 | L,D-transpeptidase catalytic domain. | Release factor glutamine methyltransferase. | 0.748 |
SEC96160.1 | SEC96201.1 | SAMN04489727_5770 | SAMN04489727_5772 | L,D-transpeptidase catalytic domain. | RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily. | 0.633 |
SEC96160.1 | SEC96227.1 | SAMN04489727_5770 | SAMN04489727_5773 | L,D-transpeptidase catalytic domain. | methylated-DNA-[protein]-cysteine S-methyltransferase; Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated. | 0.635 |
SEC96181.1 | SEC96133.1 | SAMN04489727_5771 | SAMN04489727_5769 | Release factor glutamine methyltransferase. | Amino acid transporter. | 0.532 |
SEC96181.1 | SEC96160.1 | SAMN04489727_5771 | SAMN04489727_5770 | Release factor glutamine methyltransferase. | L,D-transpeptidase catalytic domain. | 0.748 |
SEC96181.1 | SEC96201.1 | SAMN04489727_5771 | SAMN04489727_5772 | Release factor glutamine methyltransferase. | RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily. | 0.655 |
SEC96181.1 | SEC96227.1 | SAMN04489727_5771 | SAMN04489727_5773 | Release factor glutamine methyltransferase. | methylated-DNA-[protein]-cysteine S-methyltransferase; Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated. | 0.657 |
SEC96201.1 | SEB34966.1 | SAMN04489727_5772 | SAMN04489727_1101 | RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily. | DNA-directed RNA polymerase subunit beta'. | 0.444 |
SEC96201.1 | SEC96133.1 | SAMN04489727_5772 | SAMN04489727_5769 | RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily. | Amino acid transporter. | 0.456 |
SEC96201.1 | SEC96160.1 | SAMN04489727_5772 | SAMN04489727_5770 | RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily. | L,D-transpeptidase catalytic domain. | 0.633 |
SEC96201.1 | SEC96181.1 | SAMN04489727_5772 | SAMN04489727_5771 | RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily. | Release factor glutamine methyltransferase. | 0.655 |
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