STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEC99075.1Transcriptional regulator, LacI family. (343 aa)    
Predicted Functional Partners:
SEB38565.1
LacI family transcriptional regulator.
  
     0.760
SEC46456.1
DNA-binding transcriptional regulator, LacI/PurR family.
  
     0.753
SEC51741.1
DNA-binding transcriptional regulator, LacI/PurR family.
  
     0.750
SEC99057.1
Carbohydrate ABC transporter substrate-binding protein, CUT1 family.
 
  
  0.745
SED21822.1
DNA-binding transcriptional regulator, LacI/PurR family.
  
     0.741
SEC99034.1
Carbohydrate ABC transporter membrane protein 1, CUT1 family.
 
  
  0.659
SEC22923.1
Glutamate synthase (NADPH/NADH) large chain.
    
 
 0.649
SED40154.1
Glutamate synthase (NADPH/NADH) large chain.
    
 
 0.649
SEC99017.1
Carbohydrate ABC transporter membrane protein 2, CUT1 family.
 
  
  0.637
SEC85227.1
Phosphopantetheine attachment site.
    
   0.593
Your Current Organism:
Amycolatopsis tolypomycina
NCBI taxonomy Id: 208445
Other names: A. tolypomycina, ATCC 21177, Amycolatopsis tolypomycina Wink et al. 2003, Amycolatopsis tolypophora, Amycolatopsis tolypophorous, DSM 44544, IFO 14664, IMSNU 20061, JCM 4936, NBRC 14664, NRRL B-24205, Streptomyces tolypophorus
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