STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SED04189.1Hypothetical protein. (227 aa)    
Predicted Functional Partners:
SED04226.1
Phospholipase_D-nuclease N-terminal.
  
    0.776
SED04169.1
Signal transduction histidine kinase.
  
    0.774
SED04150.1
DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains.
       0.773
SED04210.1
ABC-2 type transport system ATP-binding protein.
       0.773
SEB32073.1
ABC-2 type transport system permease protein.
   
  0.541
SED14859.1
ABC-2 family transporter protein.
   
  0.541
SED20486.1
ABC-2 type transport system permease protein.
   
  0.541
SED44473.1
Hypothetical protein.
   
  0.541
SED58407.1
ABC-2 type transport system permease protein.
   
  0.541
SED75171.1
ABC-2 family transporter protein.
   
  0.541
Your Current Organism:
Amycolatopsis tolypomycina
NCBI taxonomy Id: 208445
Other names: A. tolypomycina, ATCC 21177, Amycolatopsis tolypomycina Wink et al. 2003, Amycolatopsis tolypophora, Amycolatopsis tolypophorous, DSM 44544, IFO 14664, IMSNU 20061, JCM 4936, NBRC 14664, NRRL B-24205, Streptomyces tolypophorus
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.