STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SED12043.1ChrR Cupin-like domain-containing protein. (152 aa)    
Predicted Functional Partners:
SED11973.1
3-oxoacyl-[acyl-carrier protein] reductase.
    
  0.819
SED12025.1
Hypothetical protein.
       0.782
SED12000.1
3-(3-hydroxy-phenyl)propionate hydroxylase.
       0.773
SED12067.1
Reactive intermediate/imine deaminase.
       0.758
SED12090.1
2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway).
  
    0.757
SED11926.1
Malate/lactate/ureidoglycolate dehydrogenase, LDH2 family; Belongs to the LDH2/MDH2 oxidoreductase family.
       0.628
SED11954.1
Phytoene dehydrogenase-related protein.
       0.601
SED11904.1
Helix-turn-helix domain-containing protein.
  
   0.503
SED12111.1
Beta-glucosidase; Belongs to the glycosyl hydrolase 1 family.
       0.476
SED11720.1
Aminocarboxymuconate-semialdehyde decarboxylase.
    
  0.441
Your Current Organism:
Amycolatopsis tolypomycina
NCBI taxonomy Id: 208445
Other names: A. tolypomycina, ATCC 21177, Amycolatopsis tolypomycina Wink et al. 2003, Amycolatopsis tolypophora, Amycolatopsis tolypophorous, DSM 44544, IFO 14664, IMSNU 20061, JCM 4936, NBRC 14664, NRRL B-24205, Streptomyces tolypophorus
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