STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SED14760.1Hypothetical protein. (370 aa)    
Predicted Functional Partners:
SED14833.1
Trypsin-like peptidase domain-containing protein.
 
     0.937
SED14810.1
Serine/threonine-protein kinase PknG.
 
  
 0.933
SEB48355.1
Amino acid ABC transporter substrate-binding protein, PAAT family.
 
  
 0.883
SED14736.1
Carbohydrate ABC transporter substrate-binding protein, CUT1 family.
 
     0.864
SED14791.1
Ca-activated chloride channel family protein.
 
     0.858
SED14708.1
Hypothetical protein.
 
     0.817
SEB48367.1
Serine/threonine-protein kinase PknG.
 
  
 0.725
SED21022.1
Trypsin-like peptidase domain-containing protein.
 
     0.613
SEB45477.1
Putative esterase.
 
  
 0.579
SEC89169.1
S-formylglutathione hydrolase FrmB.
 
  
 0.559
Your Current Organism:
Amycolatopsis tolypomycina
NCBI taxonomy Id: 208445
Other names: A. tolypomycina, ATCC 21177, Amycolatopsis tolypomycina Wink et al. 2003, Amycolatopsis tolypophora, Amycolatopsis tolypophorous, DSM 44544, IFO 14664, IMSNU 20061, JCM 4936, NBRC 14664, NRRL B-24205, Streptomyces tolypophorus
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