STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SED28112.1Trans-aconitate 2-methyltransferase. (255 aa)    
Predicted Functional Partners:
SEC57206.1
Amino acid adenylation domain-containing protein.
    
  0.745
SED28133.1
Hypothetical protein.
       0.684
dnaG
DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.
       0.684
SEC50378.1
Ubiquinone/menaquinone biosynthesis C-methylase UbiE.
    
  0.600
SED48483.1
KR domain-containing protein.
 
  
  0.533
SEB41571.1
D-serine deaminase, pyridoxal phosphate-dependent.
      
 0.472
SED28172.1
RNA polymerase sigma-70 factor, ECF subfamily.
       0.464
SEC89247.1
Mycolic acid condensase.
    
  0.431
SEC99981.1
Phthiocerol/phenolphthiocerol synthesis type-I polyketide synthase D.
    
  0.422
SEC85123.1
AMP-binding enzyme.
    
  0.410
Your Current Organism:
Amycolatopsis tolypomycina
NCBI taxonomy Id: 208445
Other names: A. tolypomycina, ATCC 21177, Amycolatopsis tolypomycina Wink et al. 2003, Amycolatopsis tolypophora, Amycolatopsis tolypophorous, DSM 44544, IFO 14664, IMSNU 20061, JCM 4936, NBRC 14664, NRRL B-24205, Streptomyces tolypophorus
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