STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SED32694.1Subtilase family protein; Belongs to the peptidase S8 family. (1077 aa)    
Predicted Functional Partners:
SEC08522.1
Regulator of chromosome condensation (RCC1) repeat-containing protein.
  
 0.635
SEC06121.1
RHS repeat-associated core domain-containing protein.
  
 0.624
SEB33321.1
Proprotein convertase P-domain-containing protein.
 
  
 0.600
SEC65808.1
CARDB protein.
  
 
  0.545
SEB33308.1
Zn-dependent metalloprotease; Extracellular zinc metalloprotease.
    
 0.522
SEB33317.1
Zn-dependent metalloprotease.
    
 0.522
SEC41087.1
FtsX-like permease family protein.
  
     0.514
SED32652.1
ABC-2 type transport system ATP-binding protein.
   
   0.512
SEC48227.1
Hypothetical protein.
  
     0.509
SED34122.1
Hypothetical protein.
  
     0.472
Your Current Organism:
Amycolatopsis tolypomycina
NCBI taxonomy Id: 208445
Other names: A. tolypomycina, ATCC 21177, Amycolatopsis tolypomycina Wink et al. 2003, Amycolatopsis tolypophora, Amycolatopsis tolypophorous, DSM 44544, IFO 14664, IMSNU 20061, JCM 4936, NBRC 14664, NRRL B-24205, Streptomyces tolypophorus
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