STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SED51753.1Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase). (279 aa)    
Predicted Functional Partners:
SED51780.1
tRNA(Arg) A34 adenosine deaminase TadA.
 
  
  0.850
SED51806.1
tRNA-Thr(GGU) m(6)t(6)A37 methyltransferase TsaA.
       0.773
SEB33706.1
Luciferase-like monooxygenase.
  
     0.688
SEC58936.1
F420-dependent oxidoreductase, MSMEG_4879 family.
  
     0.623
SEB32268.1
FMN reductase.
  
  0.583
SEB37911.1
NAD(P)H-dependent FMN reductase; Manually curated.
   
  0.575
SED66142.1
NAD(P)H-dependent FMN reductase.
   
  0.575
SED79064.1
FMN reductase.
   
  0.572
SED49649.1
Probable F420-dependent oxidoreductase, Rv3520c family.
  
     0.552
SED51723.1
Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein.
       0.550
Your Current Organism:
Amycolatopsis tolypomycina
NCBI taxonomy Id: 208445
Other names: A. tolypomycina, ATCC 21177, Amycolatopsis tolypomycina Wink et al. 2003, Amycolatopsis tolypophora, Amycolatopsis tolypophorous, DSM 44544, IFO 14664, IMSNU 20061, JCM 4936, NBRC 14664, NRRL B-24205, Streptomyces tolypophorus
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