STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SED54785.1DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains. (221 aa)    
Predicted Functional Partners:
SED54763.1
Signal transduction histidine kinase.
 
  0.961
SED33181.1
Signal transduction histidine kinase; Manually curated.
  
 0.933
SEB33678.1
Signal transduction histidine kinase.
 
  0.824
SEB41896.1
Signal transduction histidine kinase.
 
  0.823
SEB39652.1
Signal transduction histidine kinase.
 
  0.812
SEB32647.1
Signal transduction histidine kinase.
 
  0.807
SEC79430.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
  0.792
SEC26565.1
Signal transduction histidine kinase.
  
  0.789
SEC72430.1
Signal transduction histidine kinase.
 
  0.777
SED70486.1
Signal transduction histidine kinase.
  
  0.776
Your Current Organism:
Amycolatopsis tolypomycina
NCBI taxonomy Id: 208445
Other names: A. tolypomycina, ATCC 21177, Amycolatopsis tolypomycina Wink et al. 2003, Amycolatopsis tolypophora, Amycolatopsis tolypophorous, DSM 44544, IFO 14664, IMSNU 20061, JCM 4936, NBRC 14664, NRRL B-24205, Streptomyces tolypophorus
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