STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SED68087.1Threonine dehydrogenase. (320 aa)    
Predicted Functional Partners:
SED68068.1
6-pyruvoyl-tetrahydropterin synthase.
 
     0.948
SED68002.1
Uncharacterized membrane protein YbhN, UPF0104 family.
 
     0.934
SED68018.1
Methyltransferase domain-containing protein.
 
    0.930
SED68049.1
Glycosyl transferases group 1.
 
    0.927
SED68109.1
Phosphatidylglycerophosphate synthase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
 
     0.902
SEC16270.1
8-amino-7-oxononanoate synthase.
  
 
 0.825
SED31936.1
Ferredoxin-NADP reductase.
 
 
 0.800
SED67895.1
Glycosyltransferase involved in cell wall bisynthesis.
  
    0.777
SEC71467.1
Phosphoglycerol transferase MdoB.
 
     0.774
xylB
Xylulokinase.
  
 
 0.715
Your Current Organism:
Amycolatopsis tolypomycina
NCBI taxonomy Id: 208445
Other names: A. tolypomycina, ATCC 21177, Amycolatopsis tolypomycina Wink et al. 2003, Amycolatopsis tolypophora, Amycolatopsis tolypophorous, DSM 44544, IFO 14664, IMSNU 20061, JCM 4936, NBRC 14664, NRRL B-24205, Streptomyces tolypophorus
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