STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SED69748.1ABC-2 type transport system permease protein. (396 aa)    
Predicted Functional Partners:
SED69733.1
ABC-2 type transport system ATP-binding protein.
 
 
 0.978
SEC17548.1
ABC-2 type transport system ATP-binding protein.
 
 
 0.909
SED69690.1
DNA-binding transcriptional regulator, XRE-family HTH domain.
       0.790
SED69710.1
Hypothetical protein.
       0.789
SEB41200.1
ABC-type multidrug transport system, ATPase component.
 
 
 0.679
SED69670.1
Glycerol-3-phosphate dehydrogenase; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
       0.584
SED69653.1
DNA-binding transcriptional regulator, AcrR family.
       0.580
SED33181.1
Signal transduction histidine kinase; Manually curated.
  
  0.571
SED69626.1
Alkyldihydroxyacetonephosphate synthase; Manually curated.
       0.437
Your Current Organism:
Amycolatopsis tolypomycina
NCBI taxonomy Id: 208445
Other names: A. tolypomycina, ATCC 21177, Amycolatopsis tolypomycina Wink et al. 2003, Amycolatopsis tolypophora, Amycolatopsis tolypophorous, DSM 44544, IFO 14664, IMSNU 20061, JCM 4936, NBRC 14664, NRRL B-24205, Streptomyces tolypophorus
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